PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010669.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YC
Protein Properties Length: 187aa    MW: 19886.6 Da    PI: 5.2474
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010669.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1695.6e-53451481101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+ fw++q   ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fdflvdiv
  Do010669.1  45 QLQIFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIV 143
                 89******99999************************************************************************************** PP

       NF-YC  97 prdel 101
                 prd+ 
  Do010669.1 144 PRDDA 148
                 **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.66E-3050139IPR009072Histone-fold
PfamPF008083.1E-2167130IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.1E-3768145IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGAPVAYPPA AYPPAAAAGA AAYAPQLYAP PAAAAAQQAA AAQQQLQIFW AEQYREIEAT  60
TDFKNHNLPL ARIKKIMKAD EDVRMIAAEA PVVFARACEM FILELTHRGW AHAEENKRRT  120
LQKSDIAAAI ARTEVFDFLV DIVPRDDAKD ADAASAAAAA AAAAGIPRPA AGVPATDPLA  180
YYYVPQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-414014513119HapE
4g92_C3e-414014513119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123RRTLQKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1004490.0FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957138.11e-126PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9ZVL34e-64NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLF2DTV84e-90F2DTV8_HORVD; Predicted protein
STRINGBRADI4G33290.11e-87(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-56nuclear factor Y, subunit C2